{ "_id": "6a2bf4963efcd9bda42d208a", "Package": "nirs4allformats.lite", "Title": "Read Near-Infrared Spectroscopy and Spectral File Formats (No\nParquet)", "Version": "0.1.0", "Authors@R": "person(\"Gregory\", \"Beurier\", email = \"gregory.beurier@cirad.fr\", role = c(\"aut\", \"cre\"))", "Description": "Smaller variant of the R binding for the Rust-first\n'nirs4all-formats' near-infrared spectroscopy (NIRS)\nfile-loading core. When installed via R CMD INSTALL with Cargo\navailable, the package compiles a native 'extendr' static\nlibrary from 'src/rust/' and dispatches probe, read, and walk\ncalls directly through Rust. Without Cargo it falls back to\ninvoking the 'nirs4all-formats' command-line interface. This\nbuild ships every reader except the Parquet/Arrow reader (the\nsingle biggest dependency): it keeps HDF5/netCDF, MATLAB and\nall core readers (JCAMP-DX, Galactic SPC, Bruker OPUS, ASD,\nENVI, CSV, Excel, and many vendor ASCII/binary formats). The\ncomplete build with Parquet support is the sibling package\n'nirs4allformats'; feeding this build a Parquet input returns\nan actionable error naming it.", "SystemRequirements": "Cargo (Rust's package manager), rustc", "URL": "https://github.com/GBeurier/nirs4all-formats", "BugReports": "https://github.com/GBeurier/nirs4all-formats/issues", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libclang-dev", "Repository": "https://gbeurier.r-universe.dev", "Date/Publication": "2026-06-12 08:00:47 UTC", "RemoteUrl": "https://github.com/GBeurier/nirs4all-formats", "RemoteRef": "HEAD", "RemoteSha": "7ebcbc1d5a709c97ce2247fa309065078b9ba517", "RemoteSubdir": "bindings/r/nirs4allformatslite", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-12 11:46:02 UTC", "User": "root" }, "Author": "Gregory Beurier [aut, cre]", "Maintainer": "Gregory Beurier ", "MD5sum": "fec9ed52169a7e806ecf5c0b01d6f5d2", "_user": "gbeurier", "_type": "src", "_file": "nirs4allformats.lite_0.1.0.tar.gz", "_fileid": "5099e1a2e70b50bf7abbafbe053fba50d0f54800a1228e82eb090270bac3be51", "_filesize": 10956757, "_sha256": "5099e1a2e70b50bf7abbafbe053fba50d0f54800a1228e82eb090270bac3be51", "_created": "2026-06-12T11:46:02.000Z", "_published": "2026-06-12T11:59:18.654Z", "_distro": "noble", "_jobs": [ { "job": 81021069906, "time": 243, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7590731811" }, { "job": 81021069931, "time": 212, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7590722108" }, { "job": 81021069938, "time": 215, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7590723307" }, { "job": 81021069928, "time": 223, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7590725734" }, { "job": 81021069889, "time": 205, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7590727639" }, { "job": 81021069923, "time": 349, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7590783566" }, { "job": 81021069897, "time": 283, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7590758606" }, { "job": 81021069890, "time": 646, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7590866257" }, { "job": 81020183076, "time": 338, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7590652806" }, { "job": 81021069867, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 81021069908, "time": 347, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7590765077" }, { "job": 81021069866, "time": 356, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7590767636" }, { "job": 81021069855, "time": 336, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7590761189" } ], "_buildurl": "https://github.com/r-universe/gbeurier/actions/runs/27413445099", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/GBeurier/nirs4all-formats", "_commit": { "id": "7ebcbc1d5a709c97ce2247fa309065078b9ba517", "author": "GBeurier ", "committer": "GBeurier ", "message": "fix(r/win): relocate cargo target+CARGO_HOME to short /tmp (Windows MAX_PATH)\n\nThe windows-release CI leg failed installing both packages. Two distinct\nWindows-only causes, both fixed here:\n\n* nirs4allformats.lite: cc-rs's `ar` step for lzma-sys failed with\n \"<...>/lzma_encoder_optimum_fast.o: No such file or directory\" — the object\n path is 262 chars, over Windows' 260 MAX_PATH. The object lives under\n .Rcheck/00_pkg_src//src/rust/target//release/build/\n lzma-sys-/out/, and the longer \".lite\" package name pushes it over.\n* nirs4allformats (full): linking `rds2rust` (a cdylib dep of the MATLAB\n reader) failed with \"cannot find -lgcc_eh\"; the libgcc_eh mock dir was on a\n DOUBLED LIBRARY_PATH ($(CURDIR)/$(TARGET_DIR), both absolute) so the linker\n never found it. (The un-double landed in the prior commit; this commit makes\n the relocation cover it too.)\n\nFix: in both src/Makevars.win, relocate CARGO_TARGET_DIR and the build-local\nCARGO_HOME from the deep in-package rust/target onto the short Rtools /tmp mount,\nrendered as a native Windows path via `cygpath -m /tmp` (e.g. C:/rtools45/tmp)\nwhich cargo.exe accepts directly. This keeps every cargo-written path well under\n260 and sidesteps the backslash/MSYS hazards of $(TMPDIR)/$(TEMP) in make. The\nlibgcc_eh mock and rust_clean now reference the relocated dir; the package source\ntree is untouched (target/ never lands in it on Windows either). Linux/macOS keep\nthe in-package target + post-link rust_clean (no MAX_PATH there; verified).\n\ncran-comments.md (both) document the relocation.\n\nCo-Authored-By: Claude Opus 4.8 \n", "time": 1781251247 }, "_maintainer": { "name": "Gregory Beurier", "email": "gregory.beurier@cirad.fr", "login": "pamdeveloper", "description": "", "uuid": 26689252 }, "_registered": true, "_dependencies": [ { "package": "jsonlite", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" } ], "_owner": "gbeurier", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-21", "n": 139 }, { "week": "2026-22", "n": 11 }, { "week": "2026-23", "n": 11 }, { "week": "2026-24", "n": 44 } ], "_tags": [ { "name": "v0.1.0-alpha.1", "date": "2026-06-10" }, { "name": "v0.1.0", "date": "2026-06-11" } ], "_stars": 17, "_contributors": [ { "user": "gbeurier", "count": 165, "uuid": 95907737 }, { "user": "pamdeveloper", "count": 40, "uuid": 26689252 } ], "_userbio": { "uuid": 95907737, "type": "user", "name": "Gregory Beurier", "description": "Researcher at CIRAD.\r\nInterested in complex systems modeling and machine learning." }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/nirs4allformats.lite" }, "_devurl": "https://github.com/gbeurier/nirs4all-formats", "_searchresults": 2, "_cargo": true, "_topics": [ "rust", "cargo" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/nirs4allformats.lite.html", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_cranurl": false, "_exports": [ "nirs4allformats_as_tibble", "nirs4allformats_native_available", "nirs4allformats_open_bytes", "nirs4allformats_open_dataset", "nirs4allformats_open_records", "nirs4allformats_open_with_sidecars", "nirs4allformats_probe_path", "nirs4allformats_version", "nirs4allformats_walk_path" ], "_help": [ { "page": "as.data.frame.nirs4allformats_dataset", "title": "Build a wide data frame from a dataset", "topics": [ "as.data.frame.nirs4allformats_dataset" ] }, { "page": "as.matrix.nirs4allformats_dataset", "title": "Extract the spectral matrix from a dataset", "topics": [ "as.matrix.nirs4allformats_dataset" ] }, { "page": "nirs4allformats_as_tibble", "title": "Convert a dataset to a tibble", "topics": [ "nirs4allformats_as_tibble" ] }, { "page": "nirs4allformats_native_available", "title": "Report whether the native Rust backend is loaded", "topics": [ "nirs4allformats_native_available" ] }, { "page": "nirs4allformats_open_bytes", "title": "Decode raw bytes through the native registry", "topics": [ "nirs4allformats_open_bytes" ] }, { "page": "nirs4allformats_open_dataset", "title": "Read a spectroscopy file into a flat spectral dataset", "topics": [ "nirs4allformats_open_dataset" ] }, { "page": "nirs4allformats_open_records", "title": "Read a spectroscopy file into normalized records", "topics": [ "nirs4allformats_open_records" ] }, { "page": "nirs4allformats_open_with_sidecars", "title": "Decode raw bytes with companion sidecar files", "topics": [ "nirs4allformats_open_with_sidecars" ] }, { "page": "nirs4allformats_probe_path", "title": "List candidate readers for a file", "topics": [ "nirs4allformats_probe_path" ] }, { "page": "nirs4allformats_version", "title": "Report the nirs4allformats binding version", "topics": [ "nirs4allformats_version" ] }, { "page": "nirs4allformats_walk_path", "title": "Walk a directory and report per-file outcomes", "topics": [ "nirs4allformats_walk_path" ] } ], "_readme": "https://github.com/GBeurier/nirs4all-formats/raw/HEAD/bindings/r/nirs4allformatslite/README.md", "_rundeps": [ "jsonlite" ], "_score": 3.5314789170422554, "_indexed": true, "_nocasepkg": "nirs4allformats.lite", "_universes": [ "gbeurier", "pamdeveloper" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", 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